Scaffold Ga0209443_1087825

Overview

Basic Information

• Taxon OID: 3300027707
• Scaffold ID: Ga0209443_1087825
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1196
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002052	Metagenome / Metatranscriptome	599	Y
F005701	Metagenome / Metatranscriptome	392	Y
F057139	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209443_10878251	F057139	N/A	RMNVVKLTRNYNGYHYFSHRVEFYGGPDVRIKQWIKVRNWLWTQFGPSAEQALARADNFDGIQPIWAWDSEKSAVYLKEEALVMFQLRKEFWENVQNL
Ga0209443_10878252	F002052	AGGAG	MSRIYNFKFTVECAGNGTPDMARVEEMIDLSMQDLVFDDEFITALDEKQSVTIQVNLVK
Ga0209443_10878254	F005701	AGGA	MFTQCIAYAKLVYNKKINSYKVQIAFNVHKELVGTNYKMRFPVQAKCNYVSGDLLAENLEAEVQRTIITA