Basic Information | |
---|---|
Taxon OID | 3300027707 Open in IMG/M |
Scaffold ID | Ga0209443_1087825 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1196 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002052 | Metagenome / Metatranscriptome | 599 | Y |
F005701 | Metagenome / Metatranscriptome | 392 | Y |
F057139 | Metagenome | 136 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209443_10878251 | F057139 | N/A | RMNVVKLTRNYNGYHYFSHRVEFYGGPDVRIKQWIKVRNWLWTQFGPSAEQALARADNFDGIQPIWAWDSEKSAVYLKEEALVMFQLRKEFWENVQNL |
Ga0209443_10878252 | F002052 | AGGAG | MSRIYNFKFTVECAGNGTPDMARVEEMIDLSMQDLVFDDEFITALDEKQSVTIQVNLVK |
Ga0209443_10878254 | F005701 | AGGA | MFTQCIAYAKLVYNKKINSYKVQIAFNVHKELVGTNYKMRFPVQAKCNYVSGDLLAENLEAEVQRTIITA |
⦗Top⦘ |