Scaffold Ga0209581_1002267

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209581_1002267

Scaffold Ga0209581_1002267

Overview

Basic Information
Taxon OID	3300027706 Open in IMG/M
Scaffold ID	Ga0209581_1002267 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18888
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (90.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035032	Metagenome / Metatranscriptome	173	Y
F094037	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_100226720	F094037	AGAAGG	MPSGPCCRCLLCRIETELSADLRSSGARYAALRGSAPNGLRSFASPLDLASHLKATQAGPSSDDLLRELLAARPAEPQLVETLLIVAFVPVLHGTVRRIAKRQSRLSRADIVQEAVSVFLQVLRSGQTRKRESHLAFAISRAVKRQLFAWAAREGAVLEPASRTDPAARSEAGDDNEIMERHAALRHFLHRCLANGLLNEAELDLLIQLKLDGNTGEEIAETNSLTANAVRQRMKRLLAKLRRLAGSAPAAS
Ga0209581_10022677	F035032	GGAGG	MAIIKKPPQSVNRSLQFDQPVSDLLDDYARFLDCTPDYVANFALRKTLARDPEYKKWRASRDGAATGKRTVSLPQVGKSS

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