Scaffold Ga0209581

Basic Information
Taxon OID	3300027706 Open in IMG/M
Scaffold ID	Ga0209581_1000806 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209581_1000806 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	47349
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (81.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

47349

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (81.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000335	Metagenome / Metatranscriptome	1276	Y
F000451	Metagenome / Metatranscriptome	1124	Y
F002448	Metagenome / Metatranscriptome	558	Y
F007212	Metagenome / Metatranscriptome	355	Y
F010139	Metagenome / Metatranscriptome	308	Y
F050849	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_100080615	F010139	AGG	MPQLVYVKSPQGDEIKEVEATAEALSPLLSKGWHQVPVPAELKPAAPAEEKGLAVRWLT
Ga0209581_100080616	F002448	GAGG	MINPKTLLAEWVAALQALPNLVEALGGNQNHIQFYSENAVVFGKPTQNNIRMAILSMPPGSILVAWQGSGPGRLGNALVFVHDFSLYLRAPEQADVGYEDLFNLIVNDIPAGASLRMLHTPIDPNCEPMDFYLPSARRNTIVISADGATFEYFECPVRLIESFNP
Ga0209581_100080617	F007212	N/A	MSDWATIAAGVNAAMQDAFGEPVVYQSVQGGFPVGDPLTITAIRHVRERGESGAAASAEEISINPADLPADPQPGDWVTAWGTQFVVGPVRQPDPNGMVQLSLIARQSPDDQP
Ga0209581_100080621	F050849	N/A	MRVCEFIEREAGHVTVSLVLIALGAVLWLLKVPKGEDLIPFALGVLGRSMIGKPNEPSR
Ga0209581_10008066	F000335	GGA	MPGNLQPAAPNGVMPASLCTAFTELREYVQLQNQYHDGTVQRSQLAQTSRRTFRLSKRLSASALSALYNFWVSQNGGLTPFAFYNPFDVAAGQHIGSNYDPTGNNTQGRVTVAFRGNWAQATDLARSDVQALELVEVA
Ga0209581_10008069	F000451	GAG	MPRFQTAIRRARFVYSPYTAVEMQGFAQVLADAIRTRIQSGQNIYDQPAAPLKPGKPGRRGYPDYKSARGLQPIRDWTWSGHTLRCLKVLTANENRAVIGFLDEALPGRRQTASQIALYNNLRERQWGVSPRDRAAVIAAILSGRRIVTVKAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209581_1000806

Overview

Ecosystem & Geography

Associated Families

Sequences