Scaffold Ga0209581_1000114

Overview

Basic Information

• Taxon OID: 3300027706
• Scaffold ID: Ga0209581_1000114
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 259866
• Total Scaffold Genes: 286
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 234 (81.82%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y
F011110	Metagenome / Metatranscriptome	295	Y
F025048	Metagenome	203	Y
F030458	Metagenome	185	Y
F031889	Metagenome / Metatranscriptome	181	Y
F046796	Metagenome / Metatranscriptome	150	Y
F050849	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_1000114110	F025048	GGA	MLNPAAMVDSIVTTLQAIPDLAAAMTVLDENGTPTCRISAFHYRLGVEHRLAEAIFKMPAPSLMLVWEGTQGGNFDGQTIWKHRFSMYFRMGNAVGQTEPMGYEELWWTVCNKPPTGSPVCIRYMNLYPGLDIMDTPSVAHALDEDLQDRFVGTFVIPEIGDN
Ga0209581_1000114113	F031889	AGGAG	MYGSIPEGGITIKVPNPPKAARVRLPTNDEMLGRLAHQKSIRRTIGRRKSQTEFVPNPQADLALFNQIRLDKDGPEFDEFEAGNAISKLTYCEVTGCERVGDEYRITLKTPFGDTTHTMKIPTQRDVTVYRRTVVSATDLPHGQEELRYRIEPAVDLYDSVVSKAEGYVDGLKISDVPPHHKSAVAVELVSALDDLDPSLDPNF
Ga0209581_1000114116	F030458	AGG	MPFQAKITRARFVLGPFTSEDMLEIGNVVVESIKGRLHKGLNINDQPAKPLKPGRNGKKGYPDYKAGRGLQPFRDWFWTGRTLRSLKVKSASENRCVIGFIDPNADRIAHVNNIRERAFGISPKDRLALTAIVRAVLRRARVVRVARAA
Ga0209581_1000114132	F050849	N/A	MSIRADFLEREAGHVVVCLILIAMGAGLWVLHVPKGEDLIPFALGVLGRSMVGRRPEEPP
Ga0209581_1000114141	F046796	GGAGG	MDVLENIIERISETQEQRDVYLRQAEAEEQKITKLEQMYYLLEDPATQELMKDVVVGMAVQNGVPVPNGNKGDAGEKHYVGMQRVREYVAEVPAKREFTVHDIFAASIAHMPSTPKIRHPEFEKQRKASISLALTSMAKAGDVEVVKQGRGREATVYRRPEGK
Ga0209581_1000114200	F011110	GGAG	MDKLWMKPPFGVGDPKEVDATPEVLTPLMVAGWSQCDPPADHEEVTTNVHD
Ga0209581_1000114203	F001564	N/A	LCPDAPEGGRCDHCPQDQLDAAQTSESGLLIRRALDLRAALNLGIHIGLDDIRADEFYTMLILDDERDQLERERINAHGK
Ga0209581_1000114226	F046796	AGGAGG	MDVLEGILERISQTQEQRNVYLRQAEEEEGKIAKLESMYYLLEDPTTQELMKDVVVGLAVQSGVAVPNGNKGDGGEKHYVGMQRVREYVKQVAAGQTFTVHEIYTASISHRGHGDPKYQHPEFERQRKASISLALTSMAKGGDLEVVKQGRGRECTVYRRAEGK