NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1000004

Scaffold Ga0209581_1000004


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1000004 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1127213
Total Scaffold Genes993 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)750 (75.53%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Associated Families19

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000391Metagenome / Metatranscriptome1196Y
F001763Metagenome / Metatranscriptome640Y
F004811Metagenome / Metatranscriptome423Y
F012378Metagenome / Metatranscriptome281Y
F015510Metagenome / Metatranscriptome254Y
F017874Metagenome / Metatranscriptome238Y
F021007Metagenome / Metatranscriptome221Y
F023224Metagenome / Metatranscriptome211Y
F023686Metagenome / Metatranscriptome209Y
F024657Metagenome205Y
F029519Metagenome / Metatranscriptome188Y
F034261Metagenome / Metatranscriptome175Y
F039259Metagenome / Metatranscriptome164Y
F040378Metagenome / Metatranscriptome162Y
F043740Metagenome / Metatranscriptome155Y
F045412Metagenome153Y
F052780Metagenome / Metatranscriptome142Y
F066205Metagenome127Y
F089470Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_1000004171F029519GAGMMMGRVLKAMAPFLLLISARLQGQEQNTFAYVESFRKSSTRIRESTYAVDLDLKNPTCAIRVKERNSGRDRYQFNCVPEHPSPGDSRIVGWQIRLADLSHRIYPNVLMPSPDPTQDAKQIGWLDPGKFAKIALTMERVVKVDNFYCIFRVADSHFVEAGQPYLDHLRLVIAFSNQMPHSNIRLKAD
Ga0209581_1000004331F066205N/AMAAASEAPARISFSLDFPNSIPDHYVIAISSDGRASYDSTGKLTPDSEPGDPFHADFVLSSAACKRVFDLAAKAKYFEGKVDSGKSNLASTGAKVLTYTSGDRHNRAEYNYSPLPAVQQITAYFQNLSTTLEFGRRLDFYYRHQKLALEDELKRMEELARDKSLEEVQAVAPVLRQIAADKSVLNVSRARAQRLLLASGSELPH
Ga0209581_1000004356F021007GGAGMKQDRQRNPVAVQYRGTSLEEIQEGVSAEAVSYAAGLLVEAIRNFDSARFNARQRKVTLTEAQMMAANLIARASAQLDEITLEEQLARVRHAIKEAKA
Ga0209581_1000004363F034261GAGMQDHTETLQVGLRAPEFALGSANRDGVLTLSGFLKRGVLVAEFLRGTW
Ga0209581_1000004401F039259GGAMKAKSSAELMEENRRREVEHEILSYFLAVESYPARAAREPQVSFETHCWTVYTELENGWT
Ga0209581_100000451F012378AGGGGGMKDIHEVLRRKQAKYAQLAKQIEALQQAAEKLREVAPLLAENEEDDNGVLAEMDDDAAQTNAMAAKASAGSGTPAPAKASRPVAPRWP
Ga0209581_1000004571F001763N/AMGPPPEGAFNVAAWQMIRDLVGSDPALNQAAWDSLHGVIGLLPATGTDGVERPSRAGYFE
Ga0209581_1000004601F023686AGGAGVAVPRLAVEQEQEAGPRKSKRPRWLWPMGLLATGMAGAAVLLRGCWHSKMSWPVRSQGCAYQVCTRCGIKRLFDEEAFHGYGPFSYDLQRLLAYDQAKRLKERDKAQPSIEQRPAS
Ga0209581_1000004604F024657GAGMRKAGLILTLLCFSGACSPRDFLTRRLASALISASETFSAPQQFWLRIGPVSVKDYSSAQYLVLQRRGWIVGSATPCPPEITPAPCYEVALTPAGVDAFHDLIRGTETGKEYFSVPTARRELVSVTGISKNENLADVEFIWKWAPLNEVGSALNVGGVQYKSTVAMKHYDDGWRLVEAGGARSGQPMDDALKNADPVP
Ga0209581_1000004695F089470N/AMNALPQQHSAPRTPRVHLQNEAPAVLRFDGGQSVSAQLQVVSLTGGLLSLPRPVAKGSQVRLMFLIGPGSVLAGAEMLSPLNHTQQPFRFVSLEQKDRRKLESIIPLSVYEDITEPNWMKKLRVASDQRYVPANWRRRVAVCAIGLVALGLAGAMYLRHFQLLR
Ga0209581_1000004755F015510AGGTGGMNDSLFFATFDPLYINAPETCPLCFVQPPAFSYEYCVEQEDGKRSYIKGYCCITCSGTLLHRLAGREAKEWADEEEELAAGHLDVTDLQKRRLATFGNLSR
Ga0209581_1000004799F023224AGTAGMALQAPISLSGQDRQKQIFNLLPAKATNLNRHGAAVQLHRELLVGSTVAIKNQRGTIVAARVVAQLAALRGVPTYAIEFLEVDGAAKSFWGISFPSSNAE
Ga0209581_1000004804F043740AGGAGGMDLTLTYEEIELLASILEQRHRELIKEIAHTDHHEFRQALRRNERMLESILVRLREAEVERLHV
Ga0209581_1000004808F000391AGGAGMSPETQQYESPYAVKIETASGRSATIPIAVLTPKQLEDFLQVEFKRLTQEAGAKGVRIHVERAVAADYEQVIREVGACLRSARSSVA
Ga0209581_1000004812F052780GGAGMAPTTPSSKPLGLSIVIGIAIGTLAAILSGHVAVWLIAGIVVGIAAGASIGRKKCPECEARDQAGMRAANRERRAMTG
Ga0209581_1000004824F017874GGCGGMFSMPETLRFERVFPLPSPSGKTELKIQQGGAGRFYLIVTLPAVPETNEITLSVPSELADSLTHAIGKAADYSGE
Ga0209581_1000004863F045412N/AVGTRLPVLLALLALGLTPCARAQSSEAQAPAYLLRLVHVRTTENLCVLVRGDGQYHMERDTAQKTEIFEGSLAPPELEHLQHLLSADELFDLTQEKIARPAEADHDLQLILSVHRAGYWQNLTFPLASSWEPYHESVVPLVQWLEEMRRVKNRVRLREEQARNNCLPPPKLELKVRK
Ga0209581_1000004884F004811AGGAGMNFLYAAYAATWAIHIAYLVTLGLRYARLKREIEDMGRKGR
Ga0209581_1000004933F040378AGGAGMPQELSVSYQAVKTKVHRLLDAAVEGAKSEREIEECVARWWCMVQPADRVVARKYLLTVLERSNATLRAIATTLPELEGFESRSHAPQSLSSAPEPRSSPAGRA
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