Scaffold Ga0209816_1045560

Overview

Basic Information

• Taxon OID: 3300027704
• Scaffold ID: Ga0209816_1045560
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2023
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012723	Metagenome	278	Y
F015934	Metagenome / Metatranscriptome	251	N
F030875	Metagenome / Metatranscriptome	184	N
F038412	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209816_10455603	F015934	GGAG	MRQTKELLFSGEHPRLITGASYSVYAIAIITGISNATLYRRLKGRDEVTEWDITPAHERNPERYGNKGRDSVGYSRLETATERLSAEWLRVATIKPINNNTGEYL
Ga0209816_10455605	F030875	GAGG	MKTTKALKIKVITTRPAPKRITQPASQWRDIMGGMKRGHWFEVECETRDDVYNRVGAAANSYCRGRYTFYKAAKNKYIFEIIKG
Ga0209816_10455606	F012723	AGGAGG	MYMMSDDDIKACFDGSNITLAELSAMTGKTIKQLKTILMGGK
Ga0209816_10455607	F038412	N/A	FYDYSKVLSNVRKNTLANYDLTYSASMYSKQSRAAFKKAVKAGHRIAVAFNTKGLASDELQISHSLASFDKTDLRHLDGAVIGSLTRKGSSKADRAADNLQTNSFFVTAANLVAFNDIIAVGG