Scaffold Ga0209816_1033592

Overview

Basic Information

• Taxon OID: 3300027704
• Scaffold ID: Ga0209816_1033592
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2500
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007006	Metagenome / Metatranscriptome	360	Y
F039351	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209816_10335921	F007006	N/A	IMEVALKAELRKEISRIVDLMIQGEAIRESINELKKDIKSEYDIPVATITKIATIVRKENMDEEEEKWEQLKEYVEACS
Ga0209816_10335922	F039351	AGAAG	MTASYKIMVTGDSWSAGEWDPTLTPEETRAFAEKYSMSRYLRDLGHEVAHAANPGWGDFVSLNCLMTHEMGFDFVIYVKTCATRDFKHLTAENHPEAYNTTDLFEKIKLVKEMEYNILERYKHKLCLIGGIEKIEPDFDCAFKISSITEFFYPDFKDTTIFGDYTHFEKYSDGDKKGAMKLWSIFEHKHNFWKEHPEYFASATDQVHPNRKATKALAEFIHEQLR