Scaffold Ga0209816_1005102

Overview

Basic Information

• Taxon OID: 3300027704
• Scaffold ID: Ga0209816_1005102
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8509
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076499	Metagenome	118	N
F081752	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209816_10051024	F081752	N/A	MIDISIYDIIASITGILLFWILQYSAEKDKYDDDQGEGKIKFRGFCKKWWEKHNDNVLAHFFVTAFLLIIGIENTRNLLSEYFDIPAGMDGLGASGLIGFSGSLISDILKKIIKTVKK
Ga0209816_10051025	F076499	N/A	MNKNSIIILMALALGVMILIATKQQFKVKTVVITESHTDTLYVDLPSDTVFLDKVRYISKPIHDTVFVNQEGELITNYSGEFFVDSMVSVLYSIDVKGMIEGFNFGAVKNYPPQEVITKTITNTLTEYQTMEYKALWAVLGMDMMGSPTIGLDFQNH