Scaffold Ga0209816_1004694

Overview

Basic Information

• Taxon OID: 3300027704
• Scaffold ID: Ga0209816_1004694
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8985
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F050011	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209816_100469410	F050011	N/A	MNVSIEKFSDYLKPYLLQTVAICTDKKIIRKGKLRIFQMKQHYARLTLEDEVRTRIYEIPYPFNIDTSGNTTTLSYKIDEFLNFDELELQVKLLDSTKKSKLYNNNVYIMPLAEVDL
Ga0209816_10046948	F019756	N/A	MAQRSIDTLATQKHLIDLSTHSEGDIGLTDDFELQMIFDDILLVEYVDENETGEIQRNGIFVPTNAITKAWRKARVVLIGPKTEYTKVGDVVIFPSNLGVTIANLDVNGKKVKKGIFLNEDRLFGICKLKDDSTEDNS
Ga0209816_10046949	F015734	N/A	MIVQRTTLDSLLLTKVCEVRFVRRRPRSGDGPTRRMLCTKSYEILNSVNGRTTLNYRPPSGPVQVNEVRDNLIVVWDILMQDYRAISMSSCDLIQDIPAVEFWEYFNENIYPMSPAQKFSFMNS