Scaffold Ga0209036_1031471

Overview

Basic Information

• Taxon OID: 3300027702
• Scaffold ID: Ga0209036_1031471
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1799
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9951
  • Long. (^o): -44.9972
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035336	Metagenome	172	Y
F047730	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209036_10314712	F035336	GAG	MKTFKQLMEELPKPVTPKQMDVIKSNTRFIRTPDVIKKENQKFRSLYPFPSSFLPTAKNKTKKQTKVA
Ga0209036_10314713	F047730	GGA	MKTYKEFITELNKFERFILKQGVKAIKKLNPRQSLKSIKKDALRTVKSMRSDPGNPFVSPRREAENLVKQYQNTVPGQKGANVMKTRLGKFVNYDPTRVRQGDDVTAAAGAFTMRGQSKAQTRFMDKQLKKAGKEGENARSILKNVGDQHSAIYKAPGFKANPTDAKIDSTFKKNVLGAPTTTNLPKNAVPDASKKIKAKSKIKPFKRDRK