Scaffold Ga0209447_10011844

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209447_10011844

Scaffold Ga0209447_10011844

Overview

Basic Information
Taxon OID	3300027701 Open in IMG/M
Scaffold ID	Ga0209447_10011844 Open in IMG/M
Source Dataset Name	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2509
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006153	Metagenome / Metatranscriptome	380	Y
F090979	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209447_100118442	F006153	GAG	MKRLRSWTGVVFAAFYALAFLALYVDYLRRAGTWFADLPLTLAALPFTLTMRALNGGSYAFGGDMTGRVVAAGVFGAALAYLIGLALAAVVRRLAQLFLAARWSAD
Ga0209447_100118443	F090979	AGGAG	MLRGIIPGLTIILAIGGPVSKADAQDPSARCVSVQNKQMTIASARGRGLDIEDFTEVETATFVRAFNAAPPRSSFVAREMFAAIGHDRVYVFFENGEDLCSPPSPLSRTSYEALVQEARGDGA

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