Scaffold Ga0209447_10000011

Overview

Basic Information

• Taxon OID: 3300027701
• Scaffold ID: Ga0209447_10000011
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50675
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (69.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000207	Metagenome / Metatranscriptome	1597	Y
F012826	Metagenome / Metatranscriptome	277	Y
F073826	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209447_1000001118	F073826	GAG	MGNWYTNVSVKGAQQSDVVALLEELGRRAYVTPETSGWIVVYDQQTDEFDLSILESLALTLSTRLSCTVLASCNADDDVLWLALYENGTLSTRYGSSRKSFEDGDEFPQLKETAEVLAGVFQKPESKRDVLRLLSKSHGILGVLSLYFKVRLAYAVEVHRHLDLANLLGMPRAAVGLGYRYVSSGDTPEGMDREALRRTLVG
Ga0209447_1000001123	F000207	AGG	MKMVLASVLTTILIVAMTLGAMFVLVQATEYVTSLDSPLQRAAAICAELLLGVVLLLGTVWLATHLAVRIFTKKDTSVPGEKFA
Ga0209447_1000001126	F012826	GGAG	LTSVRAHLPAYDWFHSFRNVSVRTGVYVGVFLSIVFGGWVIVANRVPILDPFALVRNFAAVTLLGLIALIPALRFWRMPGNLLTSSLVGWLILSLTYRILCMDFRGLAGRFSAIQIFVLGAVLYLLLVTLSWIGTIIRRARAANESHPNHHLS