Scaffold Ga0209752_1200803

Overview

Basic Information

• Taxon OID: 3300027699
• Scaffold ID: Ga0209752_1200803
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_250m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 549
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 8.0
  • Long. (^o): -156.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027865	Metagenome	193	Y
F059074	Metagenome	134	N
F068113	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209752_12008031	F027865	N/A	LTRKFEEKSVTEYNNIYNDMLTDQFTAHTGMYTSLF
Ga0209752_12008032	F059074	GAG	MEIDLSLNRSLEELISSYFEAYEAGMGCDSFLGVNTNATAADVSCYYVLENYLSDYGAI
Ga0209752_12008033	F068113	GGA	MRNEIEKVLEAMREDYKRWSNRCARHDSYEGYSDVKKEMEKDYCEGLEVTEGSRYWKIISDKRGSRSVSGFIVKAGDKKFREG