NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209752_1042927

Scaffold Ga0209752_1042927


Overview

Basic Information
Taxon OID3300027699 Open in IMG/M
Scaffold IDGa0209752_1042927 Open in IMG/M
Source Dataset NameMarine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_250m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1537
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)8.0Long. (o)-156.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022751Metagenome213Y
F027653Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0209752_10429271F022751AGGAGMISFIIPFSTIEKDKFLNLNEKEDLWEENDSANIIYSTIKTIKNINSLKCEKEILLVDNSHTWPEVDLPNVRVIKGWQALPVEELEKIPEYMNHRDIQASLDNLGCLTMWVSMAFHLGTQEAKGEYVVLQHNDTFYHQDCIDEMIQQMEEEELEYIGVDNKKIWISTYLLNKDFLDKYIKEYSQQPVIIQPENGGYINTKKLGFADAYFFMCKRKFFDNYNVDWYYGDTNHGATVYCL
Ga0209752_10429272F027653N/ADIKNKRLVYGSKDNPGPIGTMKRIDKYKKLGFKIDNKSFKKLYDIVKFTEEGGYLDKLKGVVKKVSWLRGEEIYPNIPNIDFFVNWLIGIKEHKYFDKFNYYLTGGFISWPEKTKDVDIIITKRDGPRTTLKELEELMVDMFDSAYDIHGFFLDTFYMRTPQWIADYPRNREVLKSVERKQLFITITKHKPPTYVVNFKRYGKLNCCYMGMWKKWWKDDDPSSLLIHRWVDLDSEYARWIDLRKIIKYYDNNKERNIEDFLNEFQEYSGY

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