NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209752_1015691

Scaffold Ga0209752_1015691


Overview

Basic Information
Taxon OID3300027699 Open in IMG/M
Scaffold IDGa0209752_1015691 Open in IMG/M
Source Dataset NameMarine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_250m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2967
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)8.0Long. (o)-156.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002348Metagenome / Metatranscriptome568Y
F033080Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0209752_10156914F033080AGGAMLEYVHRIAEKVANEPLEDELRNWIVGETEDGHMPLVRKPQHVIDEAKVDEAIMRRHDREQMEMYDDPVMNWSGHR
Ga0209752_10156916F002348AGGLKPTEKWMKYGGWTLSLTAIVIGASFLWPHFHVALLGFALIYLGVRIFNFSTFEEYREKRIKLLHKLMD

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