Scaffold Ga0209752_1007850

Overview

Basic Information

• Taxon OID: 3300027699
• Scaffold ID: Ga0209752_1007850
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_250m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4522
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 8.0
  • Long. (^o): -156.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056674	Metagenome / Metatranscriptome	137	Y
F105355	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209752_10078505	F105355	GAGG	METPNSCDNSDKLTLILNIRQGTQSTTYSVSNLPDWYDILGIFAIYGVVAMTIFYSGLWIASKYKGEQK
Ga0209752_10078507	F056674	AGGAG	MHKKEIIDKIRKGIPKFKQHGKYQMSLGALIKALQKERVGLLVKITDKHYPGRSHSYFGYHTDLAFEPIEEPVTVAEFLKECEDSVGKSFITADHFDEFYRDYVMQIGAPLWISTLGQASQKGIVDLVPTDGYIKLVTENIEKDPEEEEDGSE