Basic Information | |
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Taxon OID | 3300027697 Open in IMG/M |
Scaffold ID | Ga0209033_1002386 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10385 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (19.35%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009960 | Metagenome | 310 | Y |
F017485 | Metagenome | 240 | Y |
F021979 | Metagenome | 216 | Y |
F023789 | Metagenome / Metatranscriptome | 208 | Y |
F067472 | Metagenome / Metatranscriptome | 125 | Y |
F067745 | Metagenome / Metatranscriptome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209033_100238610 | F067472 | N/A | MLTIDNIQNIEGKEFQLSSGQKYVIGICRAYYDHYSFGVFPLAVNGVAIINDGIIYKLHRTKKSIRGYKLVAPKMSWQPYVKPENLTLKNFILELHIQTGLLNANNRKH |
Ga0209033_100238611 | F009960 | GAG | MLTIENINKINGYALEVKGKGYYFKGWDNTTNDVATFALAGVSVSNPMIRITLHKKGRMSVDYIRNTSCYVYGVAVDGLTFYYTKERLNTPEKFRDAIEQILNAI |
Ga0209033_100238614 | F067745 | N/A | MSINISTDSRHLTMKGNGKVQIKTSIQIYGTGTKMPVTIEADFTDIPHHLHQIYYQSLISQYNTSVNVYNNTKDEEPKTIREKKSEWRLNRIVDIISKAISK |
Ga0209033_10023864 | F023789 | N/A | MDTNHTHNLTGRERIELQTKIQKLQWLLKECIGLEEYELCSQIRNIIQKKYELLQTNQSNNITE |
Ga0209033_10023868 | F017485 | N/A | MNNKLKRKDILEGITFILMIVATIGMYCLLYEVKELRELTKSATNFRTIRK |
Ga0209033_10023869 | F021979 | GGA | MLTIENINILNSKFAGTAEWQIGEMFIGEQNYIFVIHKRVGEWIIGDVKHSELTIRLHRVKVIDRYVMETGLVKQNYHSRSAHSIDSMRTITDFTLCLDRHIKNIVKQ |
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