NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209704_1017143

Scaffold Ga0209704_1017143


Overview

Basic Information
Taxon OID3300027693 Open in IMG/M
Scaffold IDGa0209704_1017143 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1806
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033405Metagenome177Y
F048799Metagenome147Y
F100665Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209704_10171432F100665AGGAGMAKPYIKVVSIKDTMQGDCKLTLDMNQAGREVILQAGIQKALSDYTVKNSKKLSFWNKLQICWSILK
Ga0209704_10171435F033405GAGGMISDYKRKTDQELIAIVNKYMEKYPNANRNHIILHAHGSHQRIRDLDKKGLISLPKALPKGSNSNWNKYFSLASETNPLRKGTKYNV
Ga0209704_10171436F048799AGGAMIKSKNLLIKQGAVYGVKYPLKMIGDGAQLSAVTNLKNTQNKRRKIVQNAKLNNFSPEARIAIKEFENWQMKIFAKNAKKGWRFFQPDTVDKPTPRSSYEAWGTQYKRDDFEKNEDRNQKIMTCIFVVALLVLSIL

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