Scaffold Ga0209553_1030097

Overview

Basic Information

• Taxon OID: 3300027688
• Scaffold ID: Ga0209553_1030097
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2261
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027414	Metagenome	194	Y
F044485	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209553_10300971	F044485	GAG	MERFDDWPPPAEWEEVVITWDVMLENNRHRPPVIIDWLEKAPGGRYHLHGWKAKEGFAFRFENPVDALYFKLRWF
Ga0209553_10300975	F027414	GAGG	MSSQNNNHLYSSQQARVNTVLGDDGNWWDMLRKAELDYRATGGEKSNFQFWLTEHYGLRIYYDHDGILPNHDIVDEKKYFLFKLKYT