Scaffold Ga0209553_1006103

Overview

Basic Information

• Taxon OID: 3300027688
• Scaffold ID: Ga0209553_1006103
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5572
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209553_10061031	F002398	GGA	MIALISIFLLTALDPIKNFVSLKTYISENAKIHCKVYFINEEIPDFPRVNIIEKSKFDFFAYLDTIGIEHSKVGSYYF
Ga0209553_10061038	F105155	N/A	MYAMMMQNFLKTSAAKQLSAEIKYLEWDQVTFNFYHKSYKGYDFYKRNISLNYWQYTVTSDITSCTFKVYEKEAKTNAKLGNE