Scaffold Ga0209710_1021176

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1021176
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3394
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F000896	Metagenome / Metatranscriptome	845	Y
F033113	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_10211763	F000896	AGGAG	MTNKINLVINMSILALLIYLSVAVKTIQDEVFPDPNIMTPMNMGYDNSAELRYNIQELLNNVLRDAINQTGEQ
Ga0209710_10211765	F000302	AGGAG	MTAQTMALDTKEKIRDLEGQKIILEDRMEHLGYASNLVKMHEIESEIFEIEDTIKKLIS
Ga0209710_10211766	F033113	AGGAG	MDNSKKYQRQIVIFIEGIDGIKRHEFVHGTLYLKLEEDRDCDFIHTEIRKFYKGYIDPEGGVNMYAVGDEFAFDFVPADRETPAFADEEKGVWSEFAEEELLNNMPDEVDVMLNLEADAKEGK