Scaffold Ga0209710_1014889

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1014889
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4253
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009110	Metagenome	323	N
F030097	Metagenome	186	N
F050008	Metagenome	146	N
F063169	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_101488911	F030097	N/A	MKALDIAGTQTKVSSCMGFMASGAARDAYRRLLTASTVGQSKGEQRKSVFSRTTKEGVKK
Ga0209710_101488912	F009110	AGGA	MITSAVLYMESLKDKVPPADEEEIIVKHGTPHMRTLGIDPHEAVKAVDKLRAQGMTARDAYGQVGMTQSQYYKTKKGVTNRK
Ga0209710_10148893	F063169	N/A	MQSELIDEVLRHLDKFEKTGDWFHFSLALDALDDLKRKIENA
Ga0209710_10148896	F050008	AGG	MSQVNMNETQRKLVLDLAEDFAPFVKKVESGMALTRNHYGAYGSMISKLSKGNRKLALVFSYALMMAGANGQGISDAMQAFFPE