Basic Information | |
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Taxon OID | 3300027687 Open in IMG/M |
Scaffold ID | Ga0209710_1005830 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7668 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (86.36%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000302 | Metagenome / Metatranscriptome | 1337 | Y |
F000896 | Metagenome / Metatranscriptome | 845 | Y |
F006365 | Metagenome / Metatranscriptome | 375 | Y |
F019731 | Metagenome / Metatranscriptome | 228 | Y |
F025595 | Metagenome / Metatranscriptome | 201 | N |
F033113 | Metagenome / Metatranscriptome | 178 | Y |
F069051 | Metagenome | 124 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209710_100583011 | F019731 | AGGAG | MADLDNILSNIDLEEQKIETEEKDWYCGTCEHGPMMDNDTNCTRCGEKHSATRHMEEMTGWEDEDIEAEVEEIF |
Ga0209710_100583012 | F000896 | AGGAG | MKTDKINMVINLSILALLIYLAVTVKTIQDKVFPDPNIMIPMKGSFDQTAEMRYNLQTLLNNVLKDAINQTGEQ |
Ga0209710_100583018 | F006365 | AGG | MSNQKIPPYDYHVWFKGSKKPILMFAMHEDHIRWQCEPKIPVKIKRIYLKEEKLRSERLGPKGCVVNQPANYDKGFKVLRTWLDSEGGPPESVRKELRELFIDYDRVDRKTTTYSQKKNGRHKI |
Ga0209710_10058304 | F025595 | AGGAGG | MTIDINGLSTKFDILTSIKENIQDGDTDTAIDMVNQMIDLEPQPEEAKPVADALDHHQIMQKGIVR |
Ga0209710_10058307 | F033113 | AGGAG | MDNSKKYQRQIVIFIEGIDGIKRHEWTHGTLYLKLEDDRDCDFIHTEIRKFYKGYIDPEGGVNMYAVGDEFAFDFVPEDRETPAFDDEDESPAFPSYEEKGVWSEFAEDEQYNNMPDEVDVMLNLQDEQKRGK |
Ga0209710_10058308 | F069051 | N/A | MKHDIELFGKTAPRDYRWDQDQNAGLLNIVFHGGTFGNFLRYFLEQFSIKTPNITLDPFTDTGTSHAHKNKDFSGLIQRYHPSFINDNEGNTNLPICLITPSTGKHYLYLKKAQWFRLGDLKISPDDLWKKAVGDMSERIKSHSQVIIKLYDIKDTAHFTWIPKFIVRDWYKLEFLQDIEDTYNYQWFDTFKTHPFWEEQKMFHLDLETFFDWDTFVENITELNDMFDLGLDFDRQAEMKEIFDRGLSLDVIRQECNLVEDVLANRSDLRLDQLDVATEAFIYAETERANPDIQMPLTNRFFRDAEEIRQFIEHFPNWYRRSNPNLG |
Ga0209710_10058309 | F000302 | AGGAG | MIGTMTQDTKDKIRELEGQKVILEDRLEHLGYAGNLVKMHELENEVYEIEDTIRKLLG |
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