Scaffold Ga0209710

Basic Information
Taxon OID	3300027687 Open in IMG/M
Scaffold ID	Ga0209710_1005830 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027687 Open in IMG/M

Scaffold ID

Ga0209710_1005830 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7668
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (86.36%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7668

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (86.36%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

75.235

Long. (^o)

-150.0691

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F000896	Metagenome / Metatranscriptome	845	Y
F006365	Metagenome / Metatranscriptome	375	Y
F019731	Metagenome / Metatranscriptome	228	Y
F025595	Metagenome / Metatranscriptome	201	N
F033113	Metagenome / Metatranscriptome	178	Y
F069051	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_100583011	F019731	AGGAG	MADLDNILSNIDLEEQKIETEEKDWYCGTCEHGPMMDNDTNCTRCGEKHSATRHMEEMTGWEDEDIEAEVEEIF
Ga0209710_100583012	F000896	AGGAG	MKTDKINMVINLSILALLIYLAVTVKTIQDKVFPDPNIMIPMKGSFDQTAEMRYNLQTLLNNVLKDAINQTGEQ
Ga0209710_100583018	F006365	AGG	MSNQKIPPYDYHVWFKGSKKPILMFAMHEDHIRWQCEPKIPVKIKRIYLKEEKLRSERLGPKGCVVNQPANYDKGFKVLRTWLDSEGGPPESVRKELRELFIDYDRVDRKTTTYSQKKNGRHKI
Ga0209710_10058304	F025595	AGGAGG	MTIDINGLSTKFDILTSIKENIQDGDTDTAIDMVNQMIDLEPQPEEAKPVADALDHHQIMQKGIVR
Ga0209710_10058307	F033113	AGGAG	MDNSKKYQRQIVIFIEGIDGIKRHEWTHGTLYLKLEDDRDCDFIHTEIRKFYKGYIDPEGGVNMYAVGDEFAFDFVPEDRETPAFDDEDESPAFPSYEEKGVWSEFAEDEQYNNMPDEVDVMLNLQDEQKRGK
Ga0209710_10058308	F069051	N/A	MKHDIELFGKTAPRDYRWDQDQNAGLLNIVFHGGTFGNFLRYFLEQFSIKTPNITLDPFTDTGTSHAHKNKDFSGLIQRYHPSFINDNEGNTNLPICLITPSTGKHYLYLKKAQWFRLGDLKISPDDLWKKAVGDMSERIKSHSQVIIKLYDIKDTAHFTWIPKFIVRDWYKLEFLQDIEDTYNYQWFDTFKTHPFWEEQKMFHLDLETFFDWDTFVENITELNDMFDLGLDFDRQAEMKEIFDRGLSLDVIRQECNLVEDVLANRSDLRLDQLDVATEAFIYAETERANPDIQMPLTNRFFRDAEEIRQFIEHFPNWYRRSNPNLG
Ga0209710_10058309	F000302	AGGAG	MIGTMTQDTKDKIRELEGQKVILEDRLEHLGYAGNLVKMHELENEVYEIEDTIRKLLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209710_1005830

Overview

Ecosystem & Geography

Associated Families

Sequences