Scaffold Ga0209710_1001529

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1001529
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17478
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019031	Metagenome	232	Y
F035081	Metagenome	173	Y
F042026	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_100152912	F042026	AGGA	MKTLIHFGCSFAMGNGVPEYIKGIKSGAGATAPMNRGNFKKKYGMNAEAPHTCGSILAKKLGIEFKKIAENGVSNEMIARKLPQTKGRKVFVLIGLTSYNRREALTTSRNNSYWHTWKMVDPEAPPYYKDLPFTPWIYRGETHYTPALEADGQIRTALQILYMQSFLKLNNVPYLMFNALHNGFDDPLTYECKKLLQQVDQKHFYKLQGSFDEAQHGWCLKRKLTVSDLDEHPNVAGQRAWADELQEVVKDIWNAN
Ga0209710_100152916	F035081	GGA	MSEGERFLDKCLTTTVGLQPWPHQIINDTLSQEAFAKLKDSCFKTTLTKTTELHHIFPDQYRDWGIDFYDETVDICTNLLRNIKELVGVYPASRSYKNLGVNAHISITPPLPYKFHVHQEGLEKIWSSVTYITPEKNIGTKMYAKQTEESFVSEAPWMPNSTFIFCGQEGQTWHSYESDQQCNRITLNLFIQKTRKNKCFMEFADLGGSTKSIILRDKPRGSNL
Ga0209710_100152917	F019031	N/A	MEFFKKLHKRYHHTDPVEHIIGQQIRKLAEYDDLYENQTRFDGTVWTKFKETHGLTCQFHDDLKDIDLSKDITCLWFFRERADRSAGNDILLKDKTITYNPNALFITSSKEIKIVKRKKFFPRRPCVQIDINNEIYLNIKKGLGIDE