Scaffold Ga0209710_1001392

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209710_1001392

Scaffold Ga0209710_1001392

Overview

Basic Information
Taxon OID	3300027687 Open in IMG/M
Scaffold ID	Ga0209710_1001392 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18660
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033503	Metagenome / Metatranscriptome	177	Y
F034340	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_100139211	F033503	AGGAG	MTNEQLRKNIMKLALAESATDCTIVCGTLFAKFDVSIHEQMATNLKKTLQTFFDKRKANDCNVQMSGTLPDNEYAYDFVPVIDYRLDGIGI
Ga0209710_100139215	F034340	AGGAGG	MKYLKKIFDWVIRSYESEKPEFRPKKVYKIKGRTYYLRKRKEKLNASSN

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