Scaffold Ga0209710_1000100

Overview

Basic Information

• Taxon OID: 3300027687
• Scaffold ID: Ga0209710_1000100
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97682
• Total Scaffold Genes: 134
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 124 (92.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000375	Metagenome / Metatranscriptome	1217	Y
F015716	Metagenome / Metatranscriptome	252	Y
F027197	Metagenome / Metatranscriptome	195	N
F062172	Metagenome / Metatranscriptome	131	Y
F083267	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209710_100010056	F027197	GAG	MKLEQEAKAHVEGTRIKFYEELARNTEEIEYFINKQLWPSEEKEKALEHLTAFVLWSKHCAKTHGIR
Ga0209710_100010073	F015716	AGGA	MNELGQGFFGGIFLMYVLALPLLYHMVEPEDEEEDNRGPIKFAFMWPIVALEVIYKILVGEKDDDGTSAN
Ga0209710_100010078	F000375	GGTGG	MSKIYDLEEMIMDCWSVCNDLGVVLRQVGDGNRDPTPDEMMNTLMGMQQLYHWKFEQLFNKYEDILEAQRK
Ga0209710_100010093	F062172	GGA	MFICIATKPLNDRTDGFRFNLCGLKGLTRKRQKVRRWGLDKGKSMQAVHFGKRSIYIEKSANKTTTRRVRHFAG
Ga0209710_100010095	F083267	AGGAG	VTHNLERYHAGREAATKSADDPNFNVDVAISSFDYDPPDSPFQRGFLRGLLKCGYATVTSKWDGVLV