Scaffold Ga0209071_1021559

Overview

Basic Information

• Taxon OID: 3300027686
• Scaffold ID: Ga0209071_1021559
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2048
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000913	Metagenome / Metatranscriptome	838	Y
F012624	Metagenome	279	N
F015934	Metagenome / Metatranscriptome	251	N
F028000	Metagenome / Metatranscriptome	193	Y
F045368	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209071_10215591	F028000	AGG	MATIKTKYGYSVECFGDCNQEAVIFMCFDDEVYDGHTESTFKNWRAAVKELSEYAHRNGTELVQLESDE
Ga0209071_10215592	F000913	GAGG	MKHWEIEHNGEHIRAEWNESATFNLQTPIGGQWVDYHCFTVYGIETEQEALECVLEMIQEEVQ
Ga0209071_10215594	F045368	AGGAGG	MSNYKSAIDRLKRCESLGDIERALDGFKRVHQVGHLTDSELRRLDAKAFDIILDWEEEVTQC
Ga0209071_10215595	F012624	AGGAGG	MLNNYKGNSALIKQQKRERMEHYITDAVVWLSLSSGVVAMFTFLNWAMLARYGA
Ga0209071_10215596	F015934	GGAG	MRQTKELLFSGKHPRLITGASYSVYAIAIITGISNATLYRRLKGRDEVTEWDITPAHERNPERYGNKGRDSVGYSRLE