Scaffold Ga0209626_1000405

Overview

Basic Information

• Taxon OID: 3300027684
• Scaffold ID: Ga0209626_1000405
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9309
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003175	Metagenome / Metatranscriptome	503	N
F004122	Metagenome / Metatranscriptome	452	Y
F008922	Metagenome / Metatranscriptome	326	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209626_10004052	F004122	N/A	MTEKGLSDSGCRSAELRYEWQSFLGLLPVLDLRPTDLVLYQRCQTAVWRSRKSAISRTDLQQAAGLGFQAETLGFDLLIAQLVRDRILEPIVSSPFHFQIRRWNWTNPESVYAADGRMSLIAISREEQTARFRMVGLLSARISNPRLPEKRVQQIRKERDELERIYEATWLELENAIGSKAAEAIRKSVEETTEAGAVQLELPLEKKRNFDLEGEAKCNQ
Ga0209626_10004055	F003175	GGAGG	MNRIEFSGKSQGKGRNGYFQLHSVELINIPTDPDGQVLNIDFYPRRRVNCVGPARLLLNVEDATKLAQFLGEAVESRPPVANIEHGVLVCECGHRGTPRLEESGYQVSHALVEIVGDTIIASGWDGSSRAVSEDGDAYWLMCDGCGKLHPLPPDLHIDWR
Ga0209626_10004056	F008922	AGGTGG	MTTKQRLACGAAILRSIDARRQRTGNRNELLALEQAIVDRELIELDTRELCDEERELAGDRVRKRHVPAATRDTGALYEKDLRRANP