Scaffold Ga0209392_1069648

Overview

Basic Information

• Taxon OID: 3300027683
• Scaffold ID: Ga0209392_1069648
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1135
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F010832	Metagenome / Metatranscriptome	298	Y
F017612	Metagenome	239	N
F029676	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209392_10696481	F003803	GGAG	MTKNKTLLRFRIYDGDREYTDYAIIDSKQLLTLNYKEIISKFFYDNKVDDEQCLSDGRAVRIESEIPITDADVKKLENLSMAYLHDFSLEEVA
Ga0209392_10696482	F029676	AGGAGG	MGHLNKTFFSYMTTQDAWDEYLELIKDDEHFAEQWKDTDNDFEDWCEAYDIILVDTRDRANQLEEAQLE
Ga0209392_10696484	F017612	AGGAGG	MSIPDVDVPIGFLYETTLMKYAGGKLTKNGMIMTPDEALEHFKDLAVDEGFAESTIENSAEELLYDLKDIEEQKYQQYLEEK
Ga0209392_10696485	F010832	GGAGG	MKDIKDVVAWLEEELAHFEMAVEQHNYVSKADEIRYRMAQELLAWTLGSKFDPKYSVSRV