Scaffold Ga0209392_1000527

Overview

Basic Information

• Taxon OID: 3300027683
• Scaffold ID: Ga0209392_1000527
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8931
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018511	Metagenome / Metatranscriptome	234	N
F060725	Metagenome	132	N
F064518	Metagenome	128	N
F073276	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209392_10005271	F064518	N/A	GLFNLSGYTPMESAEKAKLYQVFQYLASKAAEEKVIDDISKSKK
Ga0209392_10005272	F073276	N/A	MSLVQLANIFEAATDAVAGLNGFSFGWASDRVRSQIYTEEGENNTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYDENGDVDTTLQITKWSNLIAFAERFILELGTTKTTNSIPDQVNLVLDSFTSIQRLITVQATFNISIKSEC
Ga0209392_10005275	F060725	N/A	MIKLFIGGQEVDLNQDQVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFVASNFKVSLIGNNADWFADVGNILVRDLGWDDIEINTANIKTNYDPLTSEHCYILMKWKAWENETFIVNNEMTPAIFVWQVLEKAFLNRGYQLNSIFKTDPFNRLIIPMGLELGADYLKNFVNLRASIPSPGVFNDFTPSPVLITFTDETTSPNFDTGGNYVSGVYTVPITATYTLKAELNILITFLIPTPTSELLIGWEINGVFEEGEDLSQEADFDDSVSIEFITDLVEGDLVRFVVIHNQPGFTMNLNGSIEIIGSKAIFEAGRTFDLQYVIPITWYVRDVIADLTTIFNLAWETNVQSKQVYAYPKDDYTIRYRADATGAISLTSFDGFFKGTDKYDLNTRDLDGSEFQILDGYKSSQVLAYATDDDTTNKEEERRGVNIYSGGYNFPTDRFDNGVEFIYTKFFAKTIHISDVDITSGGIYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRNGLDGYIRLYDDTSSASSAFDFPAAFMVNYNDPSGGDFNLSFSDEVTNFTNVMQGVFKTFHLQTYKRIELGKVYTTFAKLKPKDITQLSFRRKGIIGSSNFIIQSIEYNPKSNSPAKTVLLYDEKPNENDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFINSMTNVLVLPVNSGITQVSNTNANVLVFQNGQKLIPTIQYIISGSTIGINVNTHYDGANYEVVVNGVTKG
Ga0209392_10005277	F018511	N/A	MKGNSIWGELADRIPDEYKTQVMATVDRTYRVLSIDPVDMDYLFHIYNNFVNHYEPERRNCPACRTKVVGKMRQIVQFWRDEQ