Scaffold Ga0209769_1038877

Overview

Basic Information

• Taxon OID: 3300027679
• Scaffold ID: Ga0209769_1038877
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1629
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010918	Metagenome / Metatranscriptome	297	Y
F017298	Metagenome / Metatranscriptome	241	Y
F072337	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209769_10388771	F017298	N/A	TYTTYSLKRKMLWWREQSTEGDKGGSFNLELYLDYLDAQDEYLNPIKQEQ
Ga0209769_10388772	F010918	N/A	MKRYKVTFNYFEKGKKRIGIRILEALDRDHAIMIMAMWPKLILKVEQYEKI
Ga0209769_10388773	F072337	GAG	MKKYRVWIDDSVEPEGGFWWYCYLGFDGKLHDYIYTDEQSDTLQWYIDHGYIVEEL