Scaffold Ga0209011_1000113

Overview

Basic Information

• Taxon OID: 3300027678
• Scaffold ID: Ga0209011_1000113
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43760
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (65.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003571	Metagenome / Metatranscriptome	479	Y
F020584	Metagenome / Metatranscriptome	223	Y
F030232	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209011_10001132	F003571	GGAG	MTLDLKPEIAAALEALASAKGLSVEDYLEQLVENQLPVKLEDATRSEGSGMVWENGLFVYRTGRPLPVRVVDDAIRQAREERAQHILGKHS
Ga0209011_100011343	F030232	N/A	MTNREAILRLSVNTGDGLAMTSLHDNNAKVIRAVVRRYFGIGPVADKAEGVLMQRMAEHARSYERQENPDQWLAKCANTECDRLRNEGIHDKANRD
Ga0209011_100011344	F020584	GGA	MEKLQALQAAAREGGFVQVEESEEGSVVWLRKETPDAGTNTHQRICIDSAANILTVYWMTAPGKIDSKTFRNVSSLQEWFALHPAQ