Scaffold Ga0209333_1024353

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209333_1024353

Scaffold Ga0209333_1024353

Overview

Basic Information
Taxon OID	3300027676 Open in IMG/M
Scaffold ID	Ga0209333_1024353 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1709
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028869	Metagenome / Metatranscriptome	190	Y
F040192	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209333_10243532	F028869	GGAGG	LKTTLGPGMIAALFLLSALSATGQTQGSALTRSSALPTSVHNALENTTNKYDYDFISKGYVWSNKPLKSTAGKVCQTMKDHAFSETPYGINGDQDWNNCLNTQIRSIGYLRWLRNAGFKPNPKNRTNAQAYLKKTYTVGPWGSYSFAQLSDAVKATTGKTIP
Ga0209333_10243533	F040192	GGAG	VRTIALLFAVLMVGAASGEAKVACKLPMYIQAPHAPGDGTTDTVNLFLYGLKSAVRQHQGCVVDKMTDAHLGLYVTTVNLVNAEGRSDASVIAVALAVPLNGVPVYMDHYVLILHATDSIEGQVNGLLESIGETLDKHASPGQ

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