Scaffold Ga0209333_1000678

Overview

Basic Information

• Taxon OID: 3300027676
• Scaffold ID: Ga0209333_1000678
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17939
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000508	Metagenome / Metatranscriptome	1069	Y
F030162	Metagenome / Metatranscriptome	186	Y
F064245	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209333_10006781	F000508	AGGGGG	MMMNKVVASLRKEYSRLEKEIGQVGKALDALGHAGGKKLKKTGRTLSKDARRRIAEAQKLRWAKVRKAAAKLVKK
Ga0209333_100067812	F064245	GGA	MQESMENLTEKYIRRGHPTVDELIAAQNLSFPRDPVDLLGNFWPENESIEDFLTALRAWRGRKKN
Ga0209333_10006788	F030162	N/A	MYADNVLRELFPLLTALTAAAVVYAMREQRRRRMQIAPPRPDIAMREVSDTPALLEIERACLATDDPRVAFRRAAIENAVAALYLETIAECGVENTGEMLRAHTQAWQALREYLRLRYDDAVPDDWFDHFTRVARPYIREKVRLTREFALHLDEGAERYARIYDELLQELLQEALAAPQKKSFVPPDFSHS