Scaffold Ga0209118_1013345

Overview

Basic Information

• Taxon OID: 3300027674
• Scaffold ID: Ga0209118_1013345
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2740
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026411	Metagenome / Metatranscriptome	198	Y
F027294	Metagenome / Metatranscriptome	195	Y
F041398	Metagenome / Metatranscriptome	160	Y
F080432	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209118_10133452	F041398	AGGAG	MTKLRIQLALYMFVLSAAVAVISGVVPVRIAGAGKHNLPAIQSNGAVTLMADGGDPQPKPTPLPWLAIAS
Ga0209118_10133453	F080432	GGAGG	VDILEGQRWRCLNQECRSEILVSTSSLAQGGSNPRCSCGEIMKKPYFQPELYKFESKMEAHRSFEESPS
Ga0209118_10133454	F027294	GGA	MRVFKGFAILLTVAFISVGIFILYDPMARRSAAASDSVIPGAVLFSLALTLLYFLSRPTL
Ga0209118_10133455	F026411	GAGG	MKGPEREEKASLEEASPSTECRAEFIFYARNQVRELRSVGALGDCACDFRRPDWVLRWADWNSGLNPYLNLFLCANHAREFGLM