Scaffold Ga0209118_1000013

Overview

Basic Information

• Taxon OID: 3300027674
• Scaffold ID: Ga0209118_1000013
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 167144
• Total Scaffold Genes: 151
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 117 (77.48%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F001348	Metagenome / Metatranscriptome	717	Y
F002696	Metagenome / Metatranscriptome	536	Y
F004291	Metagenome / Metatranscriptome	445	Y
F011967	Metagenome / Metatranscriptome	285	Y
F024877	Metagenome / Metatranscriptome	204	Y
F034262	Metagenome / Metatranscriptome	175	Y
F071614	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209118_1000013125	F011967	GAGG	MNLNDQSNTVSLKEYLLAVLATEHELADQQKVFVALRFELAERALQLDHVEMLRRLDILNHAHEDARQKEASFVGREVYESQVKDHNKWRDEVNSALSNRQGKSSVTSGLAGAVGGLALSALFAMIMYLAKAVLSGFPK
Ga0209118_1000013128	F034262	AGG	MSKAKTSKARKGTKKAPPVSKKALKRIDLSVVRERITNLVGNRAVDMVETTMDEVDKGHYLAMKYLFEMIGLCPATTPEETLQEDSLAGTLLRRLRLPEETSPDTEVTKDCATDPVEQEQESDAVK
Ga0209118_1000013130	F024877	GGAGG	MEIEGLEIVRLELKYCERCGGLWMRTWGTEDVYCPSCAVEMLDLPAARRGRRPHLLVNDRVEIKSQCEELSAVCGEGGNA
Ga0209118_100001326	F071614	AGGAG	MFSKKLLVSIALVFAGATAIAAAQNDVALRGHRTTVWGKHARMTVVTEPAPSFTTTNLNDSGLVTIFSNLAATYPKGEYWCCTGYNVMGSNSGVGEQWMAAAFTPGANHTVTRIEVAVGYSQQGTNGVVLSLNRDSHGIPGKALRSWSASNLPRFGTCCTLVVKSDKSGIPVSAGKQYWIVLSTNSNELDTVDVWSVDDTNQLDSATVATYPGTSNHWKAFQTTPGLAFAVKGSN
Ga0209118_100001331	F001348	N/A	MQLMNGEEVALDEDGQKLRVKRVGRGGLRMVQFKLNGRMFEAIEQNRVKPSRWGQLAREKHRVVQFREVATHKYVAVAVDGEITEYGR
Ga0209118_100001341	F002696	N/A	MAVSIEETAAAESDKVHALVQLLRSRSYEEIRERMYDNPPGSPWWSACKTELDIRNGEQMAAALSATSHVLEKLRGSTQHFEQLADTLHESTKEVIEMLVGTREVGRRLEIAVYVTIGITLVQLFNLIFEVFRKR
Ga0209118_100001395	F000092	GAG	VKQHLGRQSGVQNVEVSLLDGKVNVTPKEDGQIDPAQLLKATYDSGVTAAEMDVTARGRIVKDSSGSLALQVEPNRSFAFASNELSKGLESLAGTPTMVTLRGQLYKKPEGKKKRDPSAPLTLLILEVQKKE
Ga0209118_100001396	F004291	AGGAGG	MNRKRIALLVLLGPIVVVPVAQAQINHIEMRVEGMT