NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209383_1194183

Scaffold Ga0209383_1194183


Overview

Basic Information
Taxon OID3300027672 Open in IMG/M
Scaffold IDGa0209383_1194183 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)596
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018080Metagenome237Y
F052205Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0209383_11941832F018080N/AMEYLDIEIFKHFLKVYTYIVWNKKSMLGFIVEDDIMKLLDEKQMIDFYHFDKTNFKVLSSKVDEYLHSND
Ga0209383_11941833F052205N/APSELTYSQWLTIEGNIDFTSLTTTMKADILNRLNDLSEEEAEEIITKLYNNRYEKDPQKQWLKMHRDGVFRHRDF

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