Scaffold Ga0209383_1024029

Overview

Basic Information

• Taxon OID: 3300027672
• Scaffold ID: Ga0209383_1024029
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2558
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006528	Metagenome / Metatranscriptome	371	Y
F008385	Metagenome	334	Y
F030249	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209383_10240291	F008385	AGGAG	LVKTNIYGDYKVCIKCGDPADVIEGTKNYCVECWYKHVNGRSFKEVDKQIKEEERFIKKK
Ga0209383_10240293	F006528	N/A	MTDKEKHSIKDIEKLAIETFKNIIEGSRSINGVTWNRIKNYKRKEQIECLKQLSQ
Ga0209383_10240294	F030249	AGGA	MRNKYGLPLIFDYVRLTDDRRLKSLEKMKYNCPEGWEKMWSLKLDQLRKNIHDRQRKTLN