Scaffold Ga0209383_1016403

Overview

Basic Information

• Taxon OID: 3300027672
• Scaffold ID: Ga0209383_1016403
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3296
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012624	Metagenome	279	N
F015934	Metagenome / Metatranscriptome	251	N
F030875	Metagenome / Metatranscriptome	184	N
F073753	Metagenome	120	Y
F101912	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209383_10164031	F073753	AGGCGG	MTDLISKLSKIDQRNVKLAILHANNGNYRALDSMVRAATKRSAPILTAIRAAL
Ga0209383_10164034	F101912	AGGAGG	MQALAIFKNKELAPVSYIANIRGRGIKHIQTLAYRFADDNGFNYSHITYYKHRKEYSTIAAKQSSPYYKEVTQ
Ga0209383_10164035	F030875	GAGG	MKTTKALKIKVITTRPAPKRITQPSSQWRDIMGGMKRGHWFEVECETGDNIYSRVNTAANNYCRGRYTFYKTAKNKYIFEIIKG
Ga0209383_10164036	F012624	AGG	MLTNYKGNSAHLKALKLARIEQHIADAVVWLSLSLGVVAVFTFLNWAMLARYGA
Ga0209383_10164037	F015934	GGAG	MRQTKELTFSGEHPRLITGANYSVYALSLITGISNATLYRRLKGRDEVTEWDITPAHERNPERYGNKGRDSVGYSRLETATERLSADWLRLAL