NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209383_1016403

Scaffold Ga0209383_1016403


Overview

Basic Information
Taxon OID3300027672 Open in IMG/M
Scaffold IDGa0209383_1016403 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3296
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012624Metagenome279N
F015934Metagenome / Metatranscriptome251N
F030875Metagenome / Metatranscriptome184N
F073753Metagenome120Y
F101912Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209383_10164031F073753AGGCGGMTDLISKLSKIDQRNVKLAILHANNGNYRALDSMVRAATKRSAPILTAIRAAL
Ga0209383_10164034F101912AGGAGGMQALAIFKNKELAPVSYIANIRGRGIKHIQTLAYRFADDNGFNYSHITYYKHRKEYSTIAAKQSSPYYKEVTQ
Ga0209383_10164035F030875GAGGMKTTKALKIKVITTRPAPKRITQPSSQWRDIMGGMKRGHWFEVECETGDNIYSRVNTAANNYCRGRYTFYKTAKNKYIFEIIKG
Ga0209383_10164036F012624AGGMLTNYKGNSAHLKALKLARIEQHIADAVVWLSLSLGVVAVFTFLNWAMLARYGA
Ga0209383_10164037F015934GGAGMRQTKELTFSGEHPRLITGANYSVYALSLITGISNATLYRRLKGRDEVTEWDITPAHERNPERYGNKGRDSVGYSRLETATERLSADWLRLAL

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