Scaffold Ga0209383_1011563

Overview

Basic Information

• Taxon OID: 3300027672
• Scaffold ID: Ga0209383_1011563
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4137
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F020259	Metagenome	225	N
F024582	Metagenome / Metatranscriptome	205	Y
F055727	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209383_101156311	F009699	N/A	MQKVDSSAPFWKELHDENRPTLNVEGTPTPRCLYNLMLTRRDVNLYAKIDMKPHRGWKIGDVKAYFGLKGGKQKIADAINAIHDELIGRLENQNDDTNEND
Ga0209383_101156312	F020259	N/A	MKMTEQTFTAVADWAERIQTMTQENSLINAQDIVHDVFGMLRDDEHFLPRL
Ga0209383_10115633	F055727	N/A	MDCNHFLEFSLSEMVEAYTYFTDIHDYEGCRLVGEAFHKTTSVEFKNLI
Ga0209383_10115639	F024582	N/A	MKSTHNTLTSLLSAWDKLEVIGTNPDKHKSILTETNIHEVSRRIAIEYRHELNNGGGYPYIVCYLVMFDENGHRRGVTNNGSWGCHGEEILEFKKWFQLKTREAATLEEERIDITQDSIADFLA