NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209383_1004012

Scaffold Ga0209383_1004012


Overview

Basic Information
Taxon OID3300027672 Open in IMG/M
Scaffold IDGa0209383_1004012 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8128
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015794Metagenome252Y
F040867Metagenome / Metatranscriptome161N
F059366Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0209383_100401210F015794AGGGGGVAKRRSHNYLRERYNCSHEEIITLFSMRGYTLRETAEALDMKYSTLKTQAWELGISFKPLTEVDRSPGHIMYQGREYLIKDLAADHGMKMKTLSDRLRYGWTAEQAVNTPVRDGNWTHREGTDREPTGTDITSIWLRKKWIL
Ga0209383_100401211F040867AGGVDIMSIENVYGQDVVNQGALYLTLLAKAVINIDGGRARTEEDDLLIAEAMAWVESFSNFIDDEEMTEH
Ga0209383_10040122F059366AGGAMISGFDSVKTKVLENAVFSSILAGSRRVSEKNRQIAINNEVKLLKHHRELGHQTAFENERSLKTERLLMREHRRWNLTKGYYAISEGVEL

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