Scaffold Ga0209383_1004012

Overview

Basic Information

• Taxon OID: 3300027672
• Scaffold ID: Ga0209383_1004012
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8128
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015794	Metagenome	252	Y
F040867	Metagenome / Metatranscriptome	161	N
F059366	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209383_100401210	F015794	AGGGGG	VAKRRSHNYLRERYNCSHEEIITLFSMRGYTLRETAEALDMKYSTLKTQAWELGISFKPLTEVDRSPGHIMYQGREYLIKDLAADHGMKMKTLSDRLRYGWTAEQAVNTPVRDGNWTHREGTDREPTGTDITSIWLRKKWIL
Ga0209383_100401211	F040867	AGG	VDIMSIENVYGQDVVNQGALYLTLLAKAVINIDGGRARTEEDDLLIAEAMAWVESFSNFIDDEEMTEH
Ga0209383_10040122	F059366	AGGA	MISGFDSVKTKVLENAVFSSILAGSRRVSEKNRQIAINNEVKLLKHHRELGHQTAFENERSLKTERLLMREHRRWNLTKGYYAISEGVEL