Scaffold Ga0209383_1001873

Overview

Basic Information

• Taxon OID: 3300027672
• Scaffold ID: Ga0209383_1001873
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12822
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Cedarrivervirus → Cedarrivervirus Sf11 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003482	Metagenome / Metatranscriptome	484	Y
F077173	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209383_100187310	F003482	N/A	MDDNLDELHEKLLDLKVARDFKETIKNTHNLIKRDTYDIPAIDQLGDLNKGTWIEHDDSNFHKLFEGLLDYCADEEQFDNLDWNTVNYEVYGADYYQQKFPGFSDEVYDILAKSTEPENKVVDHRIPSLSCNYQEVTLTFD
Ga0209383_10018732	F077173	N/A	MYILLIFTDQECKRFNAMWMYDSIKDMIENTNNVIRYSDVNKKTRVYKTAKSFFRILKISREDTALYFK