Basic Information | |
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Taxon OID | 3300027672 Open in IMG/M |
Scaffold ID | Ga0209383_1001873 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12822 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (9.09%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Cedarrivervirus → Cedarrivervirus Sf11 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: West Antarctic Peninsula | |||||||
Coordinates | Lat. (o) | -64.8156 | Long. (o) | -64.0406 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003482 | Metagenome / Metatranscriptome | 484 | Y |
F077173 | Metagenome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209383_100187310 | F003482 | N/A | MDDNLDELHEKLLDLKVARDFKETIKNTHNLIKRDTYDIPAIDQLGDLNKGTWIEHDDSNFHKLFEGLLDYCADEEQFDNLDWNTVNYEVYGADYYQQKFPGFSDEVYDILAKSTEPENKVVDHRIPSLSCNYQEVTLTFD |
Ga0209383_10018732 | F077173 | N/A | MYILLIFTDQECKRFNAMWMYDSIKDMIENTNNVIRYSDVNKKTRVYKTAKSFFRILKISREDTALYFK |
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