Scaffold Ga0209383_1001636

Overview

Basic Information

• Taxon OID: 3300027672
• Scaffold ID: Ga0209383_1001636
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13861
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009493	Metagenome	317	N
F030253	Metagenome	186	Y
F047926	Metagenome / Metatranscriptome	149	N
F094426	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209383_100163612	F030253	N/A	MKKRVKNYIRKRLHLRYVNSYINSIRWEIINTVITASATEYNYAVQKHLDNLGNLIRKYERRRRWLKF
Ga0209383_100163615	F094426	N/A	MFLTNYTADKVKLAYTFAEHLRHNWRMLDDVKKDELLNEITRLLNVDFVETRIESKLDKIKSDGKYKASRRPKLG
Ga0209383_10016366	F047926	N/A	MWIEIASNTWAEAKNDKDAQRIKEKYKDYKKKQGDNTSRHFIVGDISNEFNGII
Ga0209383_10016369	F009493	N/A	MRNNKEVIVTLGKVPSLNSFYAGSHWTKRKKAKDATFKEIEQQLGYNKGSAYNSFRVTANVRYRYDLDNSIIAVKFTSDALKTLGWVIDDSPKYFRSCVLVWTEQIPRDQAQIIITLSDAHP