Scaffold Ga0209383_1000532

Overview

Basic Information

• Taxon OID: 3300027672
• Scaffold ID: Ga0209383_1000532
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27180
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (76.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010695	Metagenome / Metatranscriptome	300	Y
F011311	Metagenome / Metatranscriptome	292	Y
F011679	Metagenome / Metatranscriptome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209383_100053236	F010695	AGGAG	MQNLNTINQNPNKIVTGPGHSIGSLTCYYKEEGKKGVNIQLTSLEEMWYTHEENVDHPVGSEYPVSINVPHMKVMRDRVMASVLARTGYDITQFDGVIHASTHPGKDSDGNPVYDDHRYMMRNV
Ga0209383_100053241	F011311	AGGAG	MYLIVDKSDMSIHREPSKRSYATTQYKSAGAAKAGITRTIKHYNMAKAQVAEAVANGEREFMAPYYHAFRDATDVELGRTHCADVDNYAVMGVNEYKLVEPIITRTGLCPGSGKEITVKESINQPHYLSPLSESYWSA
Ga0209383_100053253	F011679	GAGG	MIKERNTTVLASDYQSTEQLKKFLVHCTGAKLTPVQNDCDAFWVSGDSRGSYYERKYYKVVFGSVTQVSYTPNRSEKSGYGFDIQSSGDLNGWQLMGEYRKMIKEAMANYEAKKETA