Basic Information | |
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Taxon OID | 3300027672 Open in IMG/M |
Scaffold ID | Ga0209383_1000532 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 27180 |
Total Scaffold Genes | 56 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (76.79%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: West Antarctic Peninsula | |||||||
Coordinates | Lat. (o) | -64.8156 | Long. (o) | -64.0406 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010695 | Metagenome / Metatranscriptome | 300 | Y |
F011311 | Metagenome / Metatranscriptome | 292 | Y |
F011679 | Metagenome / Metatranscriptome | 288 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209383_100053236 | F010695 | AGGAG | MQNLNTINQNPNKIVTGPGHSIGSLTCYYKEEGKKGVNIQLTSLEEMWYTHEENVDHPVGSEYPVSINVPHMKVMRDRVMASVLARTGYDITQFDGVIHASTHPGKDSDGNPVYDDHRYMMRNV |
Ga0209383_100053241 | F011311 | AGGAG | MYLIVDKSDMSIHREPSKRSYATTQYKSAGAAKAGITRTIKHYNMAKAQVAEAVANGEREFMAPYYHAFRDATDVELGRTHCADVDNYAVMGVNEYKLVEPIITRTGLCPGSGKEITVKESINQPHYLSPLSESYWSA |
Ga0209383_100053253 | F011679 | GAGG | MIKERNTTVLASDYQSTEQLKKFLVHCTGAKLTPVQNDCDAFWVSGDSRGSYYERKYYKVVFGSVTQVSYTPNRSEKSGYGFDIQSSGDLNGWQLMGEYRKMIKEAMANYEAKKETA |
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