Scaffold Ga0209588_1002602

Overview

Basic Information

• Taxon OID: 3300027671
• Scaffold ID: Ga0209588_1002602
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4913
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022291	Metagenome / Metatranscriptome	215	Y
F036161	Metagenome / Metatranscriptome	170	Y
F040559	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209588_10026022	F036161	N/A	VDERTSARAARRLIAAGYDERNVAVLLGGIRAWHQAGYALQKWTDGA
Ga0209588_10026023	F022291	AGGAG	MTPPAAPDPANDTPDEGPPVSGLTAQQAHELVAAGRGVLVDTRDRRLFDNAHAAGALSLPLATIEAAQGHAPAGLLPPDRKIILYCA
Ga0209588_10026025	F040559	AGGA	VRALTAAVILLSLGPELRSQRAVRPVDDGVPHYSSNAVGTQFAALWRERARHPYVCLVGRVALDSSSATFVQVDSLRVADEPWATCNDPAVMGTVKLVDEIPSGVTLDAWGEMMLQQLVGVALRQPNWRIIGLMFAVPTVTMPSATATDPTGSDSLRESLVPGFLWWPRTADNVRALDVLTPSN