Scaffold Ga0209482_1040255

Overview

Basic Information

• Taxon OID: 3300027668
• Scaffold ID: Ga0209482_1040255
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1792
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042020	Metagenome / Metatranscriptome	159	N
F094399	Metagenome	106	N
F098066	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_10402551	F042020	AGGA	MKPQFDLFESTFEEWLDELSLMNHNESPHLRSILHDLYMEGHEPLDARDALEVYYPEWHEELTYLEEHPIG
Ga0209482_10402552	F098066	GGAGG	LVDFNDDYGKSEIDQALKYLLDNEMISMEWDPDKEEMVYYMTDKQRAMPKPEDWDTAM
Ga0209482_10402553	F094399	N/A	MSKRQQRTPQEIIAETEARLDRLRMRQAKTSAKSDPTLAPLLAHVDDLNKEIREAKKLLGEGPQSGIARIGKHQVWIEKIELEMEVAGDTLHNAETDKAIAQVEIVEATKAYLETSKEISAEG