NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209482_1040255

Scaffold Ga0209482_1040255


Overview

Basic Information
Taxon OID3300027668 Open in IMG/M
Scaffold IDGa0209482_1040255 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1792
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042020Metagenome / Metatranscriptome159N
F094399Metagenome106N
F098066Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209482_10402551F042020AGGAMKPQFDLFESTFEEWLDELSLMNHNESPHLRSILHDLYMEGHEPLDARDALEVYYPEWHEELTYLEEHPIG
Ga0209482_10402552F098066GGAGGLVDFNDDYGKSEIDQALKYLLDNEMISMEWDPDKEEMVYYMTDKQRAMPKPEDWDTAM
Ga0209482_10402553F094399N/AMSKRQQRTPQEIIAETEARLDRLRMRQAKTSAKSDPTLAPLLAHVDDLNKEIREAKKLLGEGPQSGIARIGKHQVWIEKIELEMEVAGDTLHNAETDKAIAQVEIVEATKAYLETSKEISAEG

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