Scaffold Ga0209482_1019613

Overview

Basic Information

• Taxon OID: 3300027668
• Scaffold ID: Ga0209482_1019613
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2955
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001802	Metagenome / Metatranscriptome	632	Y
F007827	Metagenome	344	Y
F038864	Metagenome	165	Y
F061291	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_10196132	F061291	N/A	MKTKEELEQAIVMYEEALESSKHSVIVDTQDLEQAKKELASVNKPVLTPEQLDDITIAVEKGVGEFDFSDDDNYDKEFELDYDGRVQLANFDFTNSQELIEMIVEEVHKLFVEVEDND
Ga0209482_10196136	F001802	N/A	MKTIKQLKNNYLQLGNVIYRPYTVCELPANFGCINFNEKEGVSEWFNYKGFTYLYETMAK
Ga0209482_10196138	F038864	N/A	MDKKLIVSALEIYKAFLVKRDISEHDQTLEILIKVNEQIKLVKEWKK
Ga0209482_10196139	F007827	AGG	MKLTNKQKRSIKRQVDLDLGTSVPVTRVFVSKKIYTRKKKHKKNG