Scaffold Ga0209482_1000520

Overview

Basic Information

• Taxon OID: 3300027668
• Scaffold ID: Ga0209482_1000520
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32741
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (19.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011526	Metagenome / Metatranscriptome	290	Y
F018086	Metagenome / Metatranscriptome	237	Y
F056079	Metagenome	138	Y
F057689	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_100052026	F011526	GGA	MIATVECYIHHRTNEQIRIAPIKAKDLFLLTKAYENCKSFFIKH
Ga0209482_100052029	F057689	N/A	MKPKKHTVNERLARLEKMTYKLALEVHSIVKAIEATQEETLEEPS
Ga0209482_10005205	F056079	N/A	MKKLANFISNLREDHKAHFIVGVLTGFPMVLLFGNIGGLIAILIYVLKELVYDKALGKGNMEFLDWLYSSIPVFFYLIIKNF
Ga0209482_100052052	F018086	N/A	MSDKSYLLGDVELHLEEIKKLSQYFESILTYNSQKELVPKKDENGKELKKLKLNFSIFEEGNYGKNVSFTIPQTKEQRENKEKKRYVANGKIYYASDELQGFVQKTEAKAEVQEEEGVDLPF