Scaffold Ga0209009

Basic Information
Taxon OID	3300027667 Open in IMG/M
Scaffold ID	Ga0209009_1000040 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027667 Open in IMG/M

Scaffold ID

Ga0209009_1000040 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58291
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (78.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

58291

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (78.43%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038324	Metagenome / Metatranscriptome	166	N
F053418	Metagenome / Metatranscriptome	141	N
F059173	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209009_100004030	F059173	GGA	VAIKLLVFMLLALACSLGAQYGSQSTTGTVVVIGWSRTKIVMAVDSRGFDDNEKYRDNICKIVRLDGHSVFTAAGNIIHARNGQALWNAQKEAIHAFQEAQTSGSSRLLKTAARNWGENMVVAINQALKEDAAGSKLMLDKNIFLTGVFLGFENGSTAMYQVEIVFDPATPQAKENFYTEHPTTTMEFGALGRNEIVNAVVAGKTHFARSELRKWAAAERGIPIKDRDVRWAIRLVQLTMEHHPQRPDVGGPIDALEITRRGIRWVERKPGCSS
Ga0209009_100004039	F038324	GGAGG	MRSIARSCIAAMLAGLMAFPGFGANEKPLGLVVQAESAQVSNAKVAIGTTVYPGDKVETDAGGALRLRMGTSQLYLLASSSATLGQRSDSLFAEVSRGTVGFSSNGADQLELEVPEGVIRASNGQAAYGQVTVVSPQEIIVSAFHGSLVLDNDGELHTIPEGKSYRVTMDLEPATTPAPAVAAYRDNADNTPAKRRRRKLAFFILFGGIGALASYGIWTVLSESPSN
Ga0209009_100004043	F053418	GGAGG	MRALSRCVLIATLIVGLLNFPAYGADEKPLGSVMQAENAHIGNANVAIGTTIFPGDTLATEAGGTLRLNLGASQLYLLSASSATLSPNATPNMVHAVVGRGTVGFSSNGSDHIELEIPEGILRAANSQPAYGQVTIVGPQEVIISAYRGTLALDHDGDTREIPAGKSFRVTMDLEPAASAQPQAPAGVGGGNKKALSTNSLIWAAVAVGAAAGTAVGIWYVLSESSSAPN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209009_1000040

Overview

Ecosystem & Geography

Associated Families

Sequences