Scaffold Ga0208975_1016215

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1016215
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2494
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039139	Metagenome	164	N
F060908	Metagenome / Metatranscriptome	132	Y
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10162153	F060908	N/A	MTRKLDYTVSESITTQSKKRIQIPKKYASYIGLKEKFVAHVTNLNGSYVISVCPTPESKKYMVDKDGAVRFPVQKNEYKIMIADSVVVIL
Ga0208975_10162154	F039139	N/A	MSMFLNAFEFTSEDIVTILRAHDTDITIQQLAEIHEILDHDSIIRSALQYNEPNMQLKSALSQAEDLMIMDGLYITEPKRFHVDD
Ga0208975_10162157	F103253	N/A	MEEKVWIYLSKTGTGFELKGADIVSAFDAFINADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQNVLTGFAKNVDIPENLKLAIFKNYTFDEEDLELEKNANS